PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0051500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 206aa    MW: 22334.5 Da    PI: 10.4969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0051500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-073681654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + +E++RR+ ++s +++L +llP++   + + +  +  L  A+ YI+++
  Spipo8G0051500 36 KTVEKKRRALMKSLYSRLNSLLPPS---TRGSVGLSKRLDDACSYIREM 81
                    679*********************8...6677666678********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.6643081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-93497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-83494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-43681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRNTGSSRRR PTTATATATA MTTKETKITF WKLERKTVEK KRRALMKSLY SRLNSLLPPS  60
TRGSVGLSKR LDDACSYIRE MRERLAKLEE RKEAMVSGTA VGRSPTAGDA ASGPAALPHL  120
EVRELGSAME VVLVSSRDDR PVFYEIVRVL EEEGAEVVNA GFAVAGGAAF HSLHSLVSEN  180
GSRHGDPQRL AERLKEVVRE LAGGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-16bHLH family protein